Worm Breeder's Gazette 11(2): 66

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Chromosome Mapping of mec-1 and tmy-1, Tropomyosin Gene

Hiroaki Kagawa, Hideki Ando, Koken Sugimoto, Martin Chalfie and Alan Coulson

Figure 1

To clone the kra-1 gene which might encode a nicotinic receptor 
associated NMDA receptor-like ion channel (Hideki Ando and Hiroaki 
Kagawa, in this issue), mec-1 gene was chosen as the starting point 
for chromosome walking.  11 lambda clones crossreacted with 5 unique 
fragments from 2 Tc1 induced mec-1 worms were mapped on the chromosome 
map LGV as was shown in the bottom.  One of the clones; HK#9.1 was 
sensibly located on the position which was calculated by the average 
relation value between genetic and physical map.  We started to RFLP 
experiment on gamma ray induced mutants to confirm the position of the 
mec-1 gene by using candidate cosmid clones.  International 
cooperation will accelerate to finish the jig saw puzzle.
Tropomyosin gene cloning was nearly finished but still continuing by 
some unlucky (The worm gazette Vol.10 #3 1988).  Any genomic library 
do not contained tropomyosin gene by some reason of sequence 
similarity to lambdoid phage.  We have already cloned two genomic 
restriction fragments which contained 6/8 exons.  By screening YAC 
library with one restriction fragment as a probe, 'tmy-1', tropomyosin 
gene was mapped on the left of unc-54 LGI.  The result was 
independently confirmed with a different approach by Larry Shriefer 
and Bob Waterston (in this issue).  They are doing experiment on 
searching a candidate mutant of tropomyosin gene defect.  Full length 
cDNA clone was also obtained from new cDNA library (kindly supplied by 
Barsted and Waterston).  Complete cloning business shows the reason 
why the gene was not packed in a phage particle.
[See Figure 1]

Figure 1